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Neil Frazer
School of Ocean and Earth Science and Technology
University of Hawaii at Manoa
Honolulu, HI 96822
neil@hawaii.edu

October 14, 2004

Mr. Rafe Mair
CKBD - 600AM
1401 West 8th Avenue
Vancouver, BC V6H 1C9

Sea lice and science notes

Summary: In regard to salmon farms and sea lice, DFO has misled the public and their elected representatives in at least three fundamental ways: (a) by pretending that the burden of proof is on those who say that sea lice transfer from farm to wild rather than on those who say they do not, (b) by doing junk science, and (c) by not supporting scientists like Alexandra Morton and John Volpe who are doing the obvious (and relatively inexpensive) scientific work that DFO ought to have done at least a decade ago. Accordingly, the scientific management of DFO may fairly be regarded as unqualified and/or ethically compromised, and key personnel should be replaced immediately with qualified scientists who have no previous connection to DFO. Longer term, fisheries science in Canada should be funded through Canada's National Science and Engineering Research Council (NSERC) or similar peer-review agency, and DFO should be relieved of any responsibility for fisheries science.

  1. How did you get involved in this?
    My hobby is traveling the coasts of BC and southeast Alaska. Some years ago I explored most of the Broughton Archipelago in a 15' boat. In 2001, when DFO's Don Noakes said that DFO didn't have the vessels to sample pink salmon fry in the Broughton, I knew something was wrong at DFO.

    The first sea lice epidemic in the Broughton (at least, the first one we are aware of) was a chance for DFO to do a beautiful piece of science at very low cost. If they had done it they would have been heroes. Sea lice transfer from farm fish to juvenile salmonids was generally accepted in Europe (by scientists not affiliated with the salmon farming industry), but it is difficult to study there because wild Atlantic salmon aren't numerous, and wild, sea-run trout spend their lives in coastal waters.

    The epidemic in the Broughton was a terrific scientific opportunity because the salmon were pink salmon fry, which are small and easy to catch, there were millions of them, and they were migrating down inlets past the farms. All DFO had to do was sample above and below the farms, which is what Alexandra Morton subsequently did.

    It's unheard of for scientists to pass up a chance to do a beautiful piece of science at very low cost-especially when it's the type of science that their mandate requires. When this happens, it almost always means that the institution they work for is only pretending to be a scientific institution.

    In that first Broughton sea lice epidemic DFO leaders did everything they could to avoid doing the obvious research: they delayed three weeks, they showed up with the wrong equipment; they sampled in the wrong places. High school students would have done a better job. Don Noakes led this sham investigation, but Dick Beamish contributed to it. The only hero was the pathologist who refused to sign off on Beamish's sea lice counts because "These fish were not gathered in scientific manner."

    If DFO leadership had scientific integrity Don Noakes (then director of PBS), Dick Beamish (former director of PBS) and Laura Richards (Regional Director of Science) would have been fired, and Wendy Watson-Wright (ADM for Science) would have offered her resignation to the Minister. In fact, nothing happened.

    My attention was also drawn to DFO by its attempts to halt and then to discredit the research of John Volpe when Volpe was a graduate student at University of Victoria. For example: Volpe had been promised Atlantic salmon from Pacific Biological Station (PBS), and at the last minute Don Noakes, then the director of PBS, refused to give Volpe the salmon. Volpe had to begin his research from scratch at another location. In science one never interferes with the research of someone else's graduate student. It is simply not done.

    In those two affairs DFO scientific leadership has shamed the many honest men and women who work at DFO, it has shamed Canada, and it has shamed science. Noakes is gone, but Beamish, Richards, and Watson-Wright remain. They should be dismissed and replaced with people with no prior connection to DFO and impeccable reputations for research.

    Since you can't have orcas without salmon, Alexandra Morton's reaction to all this was to stop studying orcas and begin studying sea lice. My reaction was to read the science on sea lice and to work on theories of parasite transfer between wild fish and farm fish.

  2. What else do you have against DFO?
    For years DFO scientific leadership has allowed the salmon farming industry to mislead the public, and even misled the public itself, by chanting that there is no proof of disease transfer from farm fish to wild fish. DFO had a duty to point out that, since elementary biology tells us to expect transfer, the burden of proof is on those who say transfer doesn't happen, not on those who say it does. DFO also had a duty to either perform the obvious experiments to study transfer (see below) or at least to state publicly that these obvious experiments had not been done.

    In its communications to the public regarding salmon farming, DFO science leadership is like a guy who stops at a bar on the way home and loses the family home in a poker game. When he gets home his wife asks him why he's late, and he says that he stopped at the bar. What he says is true, but it's the least important part of the truth.

    DFO science leadership deserves public ridicule. They have had every chance to do the right thing, and they have consistently not done so. When politicians use government scientists to deceive the public, the scientists are supposed to protest or resign. The education and all the professional activity of government scientists are paid for by the public, which asks only that they work on things they think are important and be as truthful as they can.

  3. What about sea lice?
    First lets look at theory
    It's a mathematical certainty that putting farm fish in the water will cause wild fish to decline through infections-we know this without ever putting a fish in the water-the only interesting questions are which infections and how much decline and when will it happen. The chain of causation goes like this:

    Putting more fish into the ocean results in more parasites per fish (because the spatial density of fish has been increased, making it easier for parasites to reproduce) which makes wild fish easier for predators to catch (wild fish with more infection are weaker, and thus slower) which causes wild fish to decline.

    The above holds even if you put each farm fish in its own little cage and put the cages far apart.

    Now lets look at experience
    OK, so we know before ever putting a fish in the water that disease problems are certain, and transfer to wild fish is certain, but without experience we don't know how severe the disease will be, how soon it will hit, or what form it will take. (Atlantic salmon had 217 known diseases at last count.) That's where experience enters: from experience in Norway, Scotland and Western Ireland DFO knew that that sea lice is a huge problem.

    My point is that anyone who had been reading the scientific literature knew fifteen years ago that sea lice are a problem for farm fish. DFO knew that sea lice would almost certainly be a problem in BC. They knew that there is no biological reason for sea lice not to transfer from wild fish to farm fish and vice-versa.

  4. Example: sea lice at the Burdwoods salmon farm, July 2004
    Paid spokespeople for the salmon farmers say that nobody visited that farm to investigate, which is untrue. My wife and I visited that farm two days before the Greenpeace protest. The manager gave us a tour and we chatted with him and his assistant for well over an hour. He confirmed that his fish have lice. He said that there were 660,000 fish on his farm and that, in a recent sample of twenty fish, most fish had lice and one fish had five lice with eggs.

    So what?
    OK, lets do the math for some very conservative assumptions:
    (a) one ovigerous (i.e. egg-carrying) louse for every four fish
    (b) 500,000 fish per farm
    (c) 1000 eggs/louse/month
    (d) >25 farms in the Broughton

    The number of sea lice larvae going into the water per month is therefore

    (0.25)(500,000)(1000)(25) = 3.1 billion larvae/month.

    Assume that only ten percent of those larvae survive to the copepodid stage at which they can infect fish. Then 300 million copepodids go into the water every month, and most of them go into the water right on the migration routes of juvenile wild salmon. It is unscientific to argue that juvenile wild salmon migrating past farms will escape infection unless you have very strong evidence for such a surprising result. Remember, the lice on the farm fish are the immediate descendants of lice transferred from the immediate ancestors of the juvenile wild salmon. The sea lice in question are specialized to salmonids, but they don't care which species of salmonid they infect. Moreover, juvenile pink salmon are densely aggregated and relatively slow moving, so once they are infected, it is very likely that lice will reproduce rapidly on them. All this is elementary biology.

  5. What science should DFO have done?
    When basic theory and wide experience agree, the proper scientific response is to design experiments to study the phenomenon and seek funding to carry them out. One obvious experiment is to measure lice levels on juvenile wild salmon in areas with salmon farms and in similar areas without salmon farms (as Rolston and Proctor have done for the David Suzuki Foundation). A second obvious experiment is to sample juvenile wild salmon before and after they migrate past salmon farms, as Alexandra Morton has done. A third obvious experiment is to put uninfected juvenile fish in small cages throughout an area containing salmon farms and measure the infection rates of these "sentinel fish." A fourth obvious (laboratory) experiment is to introduce an infection to a large tank of fish, with some of the fish crowded together in a cage within the tank. All of these experiments could have been carried out with less than one percent of the money DFO has spent to promote salmon aquaculture. DFO has good scientists at its lower levels, so it is impossible that these experiments were not considered. That DFO neither carried out these experiments (apart from shamming the second experiment) nor made public the need for them, shows that its management is either scientifically unqualified or ethically compromised or both.

  6. Anything else about disease?
    An essential part of nature's system of disease control for Pacific salmon is that at the end of their life they return to fresh water (which kills their parasites) and then die. Over the winter, parasites and infections decline in coastal waters for lack of hosts. In effect, nature fallows the coast for six months of the year. Nature's fallow is not total, but it is enough to do the job. Salmon farming does away with this essential fallow.

  7. What about escapes?
    This is John Volpe's specialty, but I will give you my views. Yearly escapes of Atlantic salmon from BC salmon farms constitute a de facto bioinvasion as well as an ongoing sequence of introductions. Volpe et al. (2000) found juvenile Atlantic salmon of two year classes in BC's Tsitika river, showing that escaped Atlantics are capable of spawning under natural conditions in at least some Pacific streams. A consequence of their discovery is that that the probability P of colonization by Atlantic salmon in any given year is nonzero. By an elementary calculation the probability of colonization over n years is given by 1-(1-P)n which converges to 1 in the limit of large n. As very few streams in BC are checked for Atlantic spawners, this probability calculation is retrospective as well as prospective. In other words, since farmed Atlantic salmon have been escaping in BC for over 16 years, the probability that they have already colonized is 1-(1-P)16. For example, if P is 1%, the chance that Atlantics have already colonized in BC is 15%, and if P is 2%, the chance that they have already colonized is 27%.

    Bioinvasion by Atlantics, even in small numbers, is unlikely to benefit Pacific salmon. Spawned-out Atlantic salmon, known as kelts, may overwinter in rivers, creating further potential for pathogen transmission to emerging Pacific fry with naive immune systems. In a worst-case scenario Atlantic salmon may become carriers of an infection to which they are immune but to which Pacific salmon are not immune. This type of thing has been known to happen with introduced species of birds, for example.

  8. What about qualifications?
    Salmon farming industry representatives and DFO personnel have attempted to discredit the work of Alexandra Morton because she does not have a PhD, so it is important to clarify the importance of credentials in science.

    For researchers such as Alexandra Morton credentials are irrelevant because research is anonymously reviewed by other scientists prior to publication (peer review). However, the institution that a scientist works for is significant: University scientists are promoted depending on the esteem in which they are held by their fellow scientists, and little else. Industry scientists are promoted based on their contribution to the profits of that industry. How government scientists are promoted depends on the integrity of their leadership. On a number of occasions DFO has punished scientists for publishing opinions contrary to those of the Minister, a sure sign that DFO is not run on scientific principles.

    Let's look at some key figures and their qualifications.

    Patrick Moore
    Pat Moore is a public relations person for the salmon farming industry. Pat is paid to emphasize the part of the story that benefits his client. If Pat worked for tobacco companies, he would doubtless go around saying that there is a lower incidence of Parkinson's disease in smokers, while failing to add that smoking promotes many kinds of cancers and greatly lowers life expectancy. I feel sorry for Pat that he has had to take this kind of work, but at least he is doing the job he is paid to do, which is to mislead the public. Government scientists (see below) are not paid to mislead the public.

    Alexandra Morton
    She dislikes working on sea lice, and would stop in a moment if she could. If DFO science were doing its job, she would still be studying whales full time. Instead she is doing DFO science's job for it. She has no PhD and no institutional affiliation, so her science has to be first rate to be accepted by peer-review publications. It has been accepted. There is nothing left for her to prove. I've read her manuscripts in draft, and I think they are excellent by any standard. As UBC's Daniel Pauly put it: "Alexandra has done the necessary science. The task now is to help the public understand it."

    John Volpe
    He's a scientific hero. DFO tried to prevent, and then to discredit, his PhD research, but he refused to be intimidated. I've read his papers and I think they are excellent.

    What about administrators? Although qualifications aren't important for researchers (because their work is peer reviewed) qualifications are very important for those who administer science because the public has trouble judging science, and because science administrators make asset allocation and personnel decisions that are not peer reviewed.

    Qualifications for leadership in science

    The most important qualification for a science administrator is an excellent research record, as demonstrated by either fundamental discoveries or many peer-review publications. Of course a science administrator must have other talents, but without a good research record he or she will not enjoy the respect needed to attract good people to his organization nor will he have the courage to stand up to politicians who try to capture his organization to support a political agenda. Let's see how DFO's scientific leadership meets this criterion.

    Wendy Watson-Wright
    DFO's Assistant Deputy Minister for Science, in other words, chief scientist of DFO. Her credentials: a Bachelor's in Physical Education, a Masters in Exercise Physiology, and a PhD in Physiology. These are good qualifications for a junior professor of Physical Education, but not for the chief scientist of a federal agency with an annual budget over 1.5 billion dollars. Watson-Wright should be replaced with someone with many frequently cited peer-review publications in fisheries science, someone who has never worked for DFO.

    Laura Richards
    DFO's Director of Science, Pacific Region. Having a PhD and co-authoring a few papers does not qualify you to manage science. Richards should be replaced with someone with an excellent research record who has never worked for DFO.

    Don Noakes
    It staggers belief that a man with no degree in biology and only six first-author publications was appointed director of DFO's Pacific Biological Station, once the most highly regard fisheries research institute in the world.

    One possible explanation is that Dick Beamish, the director of PBS before Noakes, didn't want to have to feed the public a lot of baloney about salmon farming, so, around 1992 he stepped down and let Noakes take his place. (Public statements leave little room for doubt that Noakes was Beamish's protege; together they cultivated rhododendrons and collected beanie babies.)

    Noakes joined DFO after graduate school in engineering, so he was never part of an organization that valued scientific integrity. What he understood was sales engineering, in which you use the science you know to sell your product.

    The paper published in Aquaculture by Noakes, Beamish and Kent is a good example of sales engineering. There are many true statements in that paper (recall my example above, about the man who stopped at the bar on the way home) but the numerical data presented were not analyzed quantitatively, and when I carried out such an analysis by standard methods I found that the data do not support the main conclusion of the paper; in fact they are more consistent with the opposite conclusion.

    Dick Beamish
    DFO's most prominent fisheries scientist. Many publications. Order of Canada for research on acid rain done early in his career. Director of PBS from about 1980 until about 1992 when he stepped down as Director and was replaced by Noakes. As noted above, Noakes was Beamish's protégé, and it is unlikely that Noakes could have been appointed Director without Beamish's support. Moreover Beamish failed to restrain Noakes or to protest Noakes' unscientific actions. Though he left his name off the report-nobody at DFO was foolish enough to sign that affront to science-Beamish cooperated fully with Noakes on the sham investigation of the first sea lice epidemic in the Broughton.

    To a scientist the important thing is this: Beamish is the one scientist at DFO that the politicians could not have ignored or discredited if he had explained to them the elementary science on disease transfer. Why he apparently failed to do so is a mystery. However, it is not unknown in science for a senior person who has accumulated many honors, is admired (or feared) by coworkers, and is held in awe by the public, to fall into the habit of thinking that the world is as he would like it to be. Beamish has stated that he knows little about salmon aquaculture, and I think this is deliberate: it seems clear that Richards and Watson-Wright depend on Beamish for their thoughts on sea lice, and it is always much easier, even for scientists, to tell those who sign your paychecks what they want to hear rather than what they need to know. It is even easier to tell them what they want to hear when you don't know much about the subject yourself. Firing someone with the Order of Canada would be a national embarrassment, so Beamish should be forcibly retired as soon as possible.

    Recent science at DFO
    The scientists at DFO now "studying" the Broughton sea lice (Dick Beamish and Brent Hargreaves) are intelligent men. If they have read the scientific literature, and thought about the elementary biology, they know that the epidemics of sea lice on pink salmon fry in the Broughton are almost certainly initiated by salmon farms. However, they also know (see my remark above) that in science, absolute proof is never possible. This gives them lots of room to wiggle and protect the industry by doing inconclusive studies. Dragging around the inlets with a big trawl, for example, as Dick Beamish does, may be a good way to do coho surveys, but it's a poor way to study pink salmon fry, which are best sampled near shore in water a few meters deep.

    DFO's Brent Hargreaves argues that Alexandra Morton did not account for variations in salinity, and that sea lice epidemics have not occurred on Muchalat Inlet. Hargreaves knows that salinity is a second order effect compared to the presence of hosts. He also knows that the inevitability of disease transfer from farm to wild doesn't mean that it will happen at every farm, or that every time it happens you will be there to observe it.

    It is not possible to do good science when one is worried about protecting an industry. When I spoke with Hargreaves about his research on sea lice he said "You can't shut down a multimillion dollar industry just because somebody waves a placard." The fact that the industry and its wealth are considerations shows that his science is constrained. In order to do good science, you can't think about who will be harmed by your research and you can't think about the money; you have to just think about the science.

    The irony is that DFO's denial of the inevitability of disease has grievously injured the aquaculture industry. Many millions of farm fish have been lost to disease simply because farms were sited on the migration routes of wild salmon.

  9. Why salmon farming?
    This is an economic question not a scientific one, but I think an economist would probably answer it as follows. South American people are poor. We can buy their fish cheap and sell them to rich North Americans for a fat profit. The problem is that North Americans aren't familiar with South American fish, and they don't like eating bony, oily little fish. So we grind up those little fish and feed them to farm salmon and then sell the farm salmon to North Americans. The protein conversion ratios are terrible, but one can still make a profit.

    The scientific dimension to the problem is that when we farm big fish by feeding them little fish, we concentrate the toxins. The smallest fish are really the safest ones to eat. It seems to me that if we taught North Americans to cook little fish, they would be healthier for it, and the reduced pressure on South American fisheries would make fish more affordable for South Americans. However, such questions are not my concern. My concern is that the public is being misled by government scientists regarding the effects of salmon farming on wild salmon. If the public had been presented with a fair scientific picture, and wanted salmon farming anyway, I would not be concerned as a scientist.

  10. What should be done?
    1. Relieve DFO of any responsibility for fisheries science. Fund fisheries science through Canada's National Science and Engineering Research Council (NSERC) or some other independent body.

    2. As (1) may take some time, Watson-Wright, Richards, and Beamish should be immediately replaced with scientists having no prior connection to DFO. Replacements should be chosen by a panel of scientists with no prior connection to DFO. If qualified replacements cannot be found, their positions should be abolished.

    3. Give Regional Districts and First Nations veto power over aquaculture. When different communities try different things, they learn from each other's successes and mistakes. In science this is known as the robustness of distributed adaptive systems. It's the opposite of having decisions about aquaculture centralized in Victoria and Ottawa.

    4. Research open-ecosystem aquaculture systems. These are systems in which predators are not excluded, thus disease control is quick and inexpensive.

    5. Put to rest the myth that fresh fish is better than frozen. Salmon frozen at sea by modern methods are superior to fresh salmon more than 1-2 days old. Halibut frozen at sea are superior to halibut more than a week old. Chefs are finding this out, but myths die slowly. BC's wild fish are a tremendously valuable economic resource available for sale every day of the year.

  11. How did we get into such a horrible situation?
    Prior to the creation of DFO, funding for fisheries science was through the Fisheries Research Board, an independent body of respected scientists. Under this system scientists were free to do research that might embarrass governments. DFO was created to prevent that from happening. Scientists knew that government control of fisheries science would lead to the kind of mess we are in now, but it was hard to make the public understand at the time.

  12. Why haven't more scientists spoken out?
    1. DFO is enormously powerful. You can't take a fish out of the ocean without a permit from DFO.
    2. Most biologists work for one government or another. They all have mortgages.
    3. After the demise of the northern cod (with loss of 50,000 jobs) and the Kemano fiasco the best Canadian fisheries scientists gave up on DFO and are now quietly waiting for it to self-destruct.

  13. Who the heck is Neil Frazer?
    Full disclosure: Neil Frazer was born in Comox, BC. He has a degree in engineering physics from the University of British Columbia, and a PhD in geophysics from Princeton University. He is Professor of Geophysics in the School of Ocean and Earth Science and Technology, University of Hawaii at Manoa. He is the author or co-author of over 50 publications in peer-review scientific journals, and his research has been supported by the National Science Foundation, the Office of Naval Research, and the American Chemical Society. He has an intimate knowledge of the coasts of BC and Alaska from his expeditions there in small, open boats, and is the author of the book, Boat-Camping Haida Gwaii: A Small Vessel Guide to the Queen Charlotte Islands. His current research interests include the population dynamics of parasite interchange between farm fish and wild fish, the bioacoustics of humpback whales, and Bayesian methods for the inversion of geophysical data. He is not financially supported by any environmental organization.